rs260997108 SNP Detail

Summary

• ID
  rs260997108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126912968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGCACCA TAATCTCACA
  ACCTTGGTTC TAGAGCAGCC TCGATTACAG AGCAAGTCCT AGACTCAGCT ATCCAAAAGA
  AGAGAAAGAA AGGAAGGAAG AAAGAAAGTA GGGTAAGGAG AGAGTGGAGG CTGATAGACG
  TTTCTCTGTA TCTTTGTGTG TGGTGTGTGT TGCTGGGGAT AAAACCTAGG GCCCCCAGGC
  Y
  TCCTATCGTG ATAGGCAAGG GCTCTACCAG TCCGACACTA TGGGTTTTTT TTGGGGGGGG
  GTTGTTGTTG TTGTTGTTTT TGTTTTGAGT CTGAATTTGG GTCCTGCTCT CTATCTCGGG
  CTCCCCTTGG ACTCTCTGTG TAGCTCAGGC TGTCCTCAAA CTTTGAGTCA TCCTCCTGCC
  TCAGCTTCCT CAAAAGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382177805	MGP_WTSI_10_126514155	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260997108					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382177805	MGP_WTSI_10_126514155	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126912968 () rs orientation: forward

Symbol	Name	Function Class
Agap2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	within coordinates
Cpgi2335	CpG island 2335	1831 bp proximal
Gm68530	predicted gene, 68530	1804 bp downstream
Rr213500	regulatory region 213500	1768 bp distal
Rr224393	regulatory region 224393	567 bp distal
Rr224394	regulatory region 224394	32 bp proximal
Tssr96119	transcription start site region 96119	1774 bp downstream
Tssr96120	transcription start site region 96120	1701 bp downstream
Tssr96121	transcription start site region 96121	1787 bp upstream
Tssr96122	transcription start site region 96122	1823 bp upstream
Tssr96123	transcription start site region 96123	1865 bp upstream
Tssr96124	transcription start site region 96124	1889 bp upstream
Tssr96125	transcription start site region 96125	1907 bp upstream
Tssr96126	transcription start site region 96126	1935 bp upstream
Tssr96127	transcription start site region 96127	1941 bp upstream