rs261003289 SNP Detail

Summary

• ID
  rs261003289
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84587945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTATGC CAGCCCAGCC
  TGGCCTCCGG AGTGACGGGA CTCAAGCCAC AGTCAGACCT GCCTGCCTGC CTCCCTCTGC
  TCTGGGTGGC CACAAAATAG GAAGGCATGA AATAAATTTA CAGCCCCAGA CTCCTGTCTG
  CCCCCTGGTG TCCTTCTGGG ACCTCCCCCC ACCCACCCAA CCACCCAACT TCCCTGACTT
  S
  GCTTTCCTGT CAGTCGCATT CCCAGGCTGG GGCCAAGGCC GCTTGTTCTT AGGTCCAGTG
  TTGCTATGTC ATCTTTTTTT GTTTGTTTGT TTTTTTTGAG ACAGGGTTTC TCTGTATAGC
  CCTAGCTGTC CTGGAACTCA CTTTGTAGAC CAGGCTGGCC TTGAACTCAG AAATCCTCCT
  GCCTCTTCCT CCCAAGTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394790116	MGP_WTSI_15_84534174	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	G	C	C	G	G	C	C	G	G	C	C	C	C	G	C	C	C	G	G	G	C	C	C	G	G	G	G	C	C	G	C	G	G	G	C	G	C	C	C	C	G	C	C	G	G	C	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261003289					SNP	C	C	C	G	C	C	G	G	C	C	G	G	C	C	C	C	G	C	C	C	G	G	G	C	C	C	G	G	G	G	C	C	G	C	G	G	G	C	G	C	C	C	C	G	C	C	G	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394790116	MGP_WTSI_15_84534174	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84587945 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	71 bp downstream
Rr304870	regulatory region 304870	1345 bp distal
Rr304871	regulatory region 304871	within coordinates
Rr314877	regulatory region 314877	1146 bp distal
Rr314878	regulatory region 314878	1620 bp proximal
Rr404546	regulatory region 404546	1403 bp downstream