rs261010173 SNP Detail

Summary

• ID
  rs261010173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72025826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAGGGTGT AATAAAAAGC AATGCTTTAC
  AATTACTTAC AAAGCCCCAG GTAAGTTAAC CAATGACCAT GCAGAGGGTT CTTCCTGCTG
  AGATTGGAAG GGATGGGAGT CTGTGTCCAT TCAGCTCCTC CTATATTCTT CCAACTAGTG
  Y
  ACACATTCCT TTCTAGTCCC TGTCGGGATT GCTATGGCTC AGAGCCTCCC TCAGTATCTT
  TTCATATAGA ATAAACCCCT TAGCGTGTTA CTGACCAATG GATCCCATAT TTGAAGCGTG
  TGTAACAATG CTTTGTCACT GTCTTTCTCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320341697	CHEV_2_72033539	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261010173					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72025826 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75163	predicted gene, 75163			1414 bp downstream
Rapgef4	Rap guanine nucleotide exchange factor (GEF) 4			Intron
				Noncoding-Transcript-Variant
Rr558927	regulatory region 558927			761 bp proximal
Rr558928	regulatory region 558928			1554 bp proximal
Rr558929	regulatory region 558929			1729 bp proximal