rs261028013 SNP Detail

Summary

• ID
  rs261028013
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37165874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTAAAGA ATGTTTTAGA
  TGATTATTAG CCTGAGAGAC CTTGAAACAA AATGACTTAT TTTAAAACCA GGCCAAATTG
  ATGACTAAGT ATCTGCCCAA TCTGACCCTT AGTTTAGTTT GAGAATTTAG ATTTGAGATT
  GCTGTGTCAT CTGTTTTGTT TTTGTTTTGT TTTTTTTAGA AGCCAGCAAC TGGCTATTTT
  S
  TTAAGTTTTA TAGTTTATAA ATGACGGTAA CTAACAAAAT GTTTTAACAC TCTTCCTTCC
  CCACCTCTTG CAGACCAAGT ACACTGCTCC AAAAGCTCAA TGGAGATTGG CTAAAACCTC
  TTCTCCCAGC ACAAGGGTGA CCTTGTGGTC CTGGGAGCAG CTGCTGTCAA TGCCAGCTCA
  TGCTTTTAAG GGTGACCACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377237267	MGP_WTSI_9_37062163	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261028013					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377237267	MGP_WTSI_9_37062163	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37165874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	594 bp proximal
Gm10177	predicted gene 10177	1397 bp downstream
Gm48081	predicted gene, 48081	920 bp upstream
Gm65989	predicted gene, 65989	1213 bp downstream
Rr676656	regulatory region 676656	96 bp proximal
Rr676657	regulatory region 676657	826 bp proximal
Rr676658	regulatory region 676658	931 bp proximal
Rr676659	regulatory region 676659	1150 bp proximal
Rr676660	regulatory region 676660	1458 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	779 bp downstream
Tssr88822	transcription start site region 88822	803 bp downstream
Tssr88823	transcription start site region 88823	825 bp downstream
Tssr88824	transcription start site region 88824	851 bp downstream
Tssr88825	transcription start site region 88825	866 bp downstream
Tssr88826	transcription start site region 88826	952 bp downstream
Tssr88827	transcription start site region 88827	1045 bp downstream
Tssr88828	transcription start site region 88828	1068 bp downstream
Tssr88829	transcription start site region 88829	1091 bp downstream
Tssr88830	transcription start site region 88830	1107 bp downstream
Tssr88831	transcription start site region 88831	1152 bp downstream