rs261029173 SNP Detail

Summary

• ID
  rs261029173
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88199232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGTGCCGT GTGCCCGAAG
  CCCCGCCCGG GCCTCAGGGG TGCCGCGGCC GCCCAGCCGC ACTTGGATGC ATAGCCTCTG
  CTGCCTGGTC CCCGCTGTTG CCGCCGCCTC CTGTCCGCAC TCGCCGCTGC TGCTGCCGCC
  GCCGCTCTGA ATTATTGATG CAGCGGGCGC TGCAGCCGGA GCGGGCGGAG AGCGCGCGCC
  K
  GGCACAAAGG CGCGGATCAA GCCTGGCCCC GCCCCCGCCC CTCCCAGCCA GCCTCTCTGA
  GCGGCCCCGC CCCTCCTCTG CCGAAGCCCC ACCCTCCAGC CAATCGCGAC GCACCGCGCT
  CCCCGCCGAG CCAATGGTTG CCCTGTCCGC GCGCGGCCAC CTGACCTAGG GCGCCGTTGT
  TATTAGGAGC GGCGAGGCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss375466013	MGP_WTSI_8_89996503	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs261029173					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375466013	MGP_WTSI_8_89996503	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88199232 () rs orientation: forward

Symbol	Name	Function Class
Cbln1	cerebellin 1 precursor protein	12 bp upstream
Cbln1os	cerebellin 1 precursor protein opposite strand	208 bp upstream
Cpgi20771	CpG island 20771	1336 bp distal
Cpgi20772	CpG island 20772	within coordinates
Rr666962	regulatory region 666962	within coordinates
Rr666963	regulatory region 666963	82 bp distal
Rr666964	regulatory region 666964	350 bp proximal
Rr666965	regulatory region 666965	436 bp proximal
Rr666966	regulatory region 666966	724 bp proximal
Rr666967	regulatory region 666967	1666 bp proximal
Tssr2634	transcription start site region 2634	75 bp upstream
Tssr78595	transcription start site region 78595	167 bp upstream
Tssr78596	transcription start site region 78596	179 bp upstream
Tssr78597	transcription start site region 78597	201 bp upstream
Tssr78598	transcription start site region 78598	234 bp upstream
Tssr78599	transcription start site region 78599	262 bp upstream
Tssr78600	transcription start site region 78600	285 bp upstream
Tssr78601	transcription start site region 78601	292 bp upstream
Tssr78602	transcription start site region 78602	549 bp upstream
Tssr78603	transcription start site region 78603	646 bp upstream
Tssr78604	transcription start site region 78604	775 bp upstream
Tssr78605	transcription start site region 78605	803 bp upstream
Tssr82312	transcription start site region 82312	1953 bp upstream
Tssr82313	transcription start site region 82313	1927 bp upstream
Tssr82314	transcription start site region 82314	471 bp upstream
Tssr82315	transcription start site region 82315	408 bp upstream
Tssr82316	transcription start site region 82316	343 bp upstream
Tssr82317	transcription start site region 82317	223 bp upstream
Tssr82318	transcription start site region 82318	33 bp upstream
Tssr82319	transcription start site region 82319	7 bp upstream
Tssr82320	transcription start site region 82320	within coordinates
Tssr82321	transcription start site region 82321	11 bp downstream