rs261030905 SNP Detail

Summary

• ID
  rs261030905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:83196992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCAACCC ATGAAGGGAC
  TTGGTCACAT ACTTAAGTTT TCTTTTCAAG TTAAGCAAAG AAAACTTAAA AAAAAAAAAA
  AAAGACTGTG GAATGTACTT TCTTCCTGTA GCACAGCTTG ATAGTGAGTT CAGATGAGGT
  ACCTTATTAC AAAGGAACTT TGCCTGATAA GCCAATTGTC TGTCTCTCTC TCTCTGTCTC
  Y
  CCCCCCCCAC GTCTCTCTCT GTGTTTGTGT GTCTTTCCTC TTCCCATCCC CCTTTCTTCC
  CCTGCCCTCT CCCATTCCCC ACCCCCATTC TCCCCCTCTC TCTTCCCCTC TCCCCCTCCA
  TGGGCATAAA ATCCAGAGCC TTCTGAATGG CAGATAAACC TTCTACAACC GGTCTTAGCC
  CCTAATACAC CTTGTGATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378276715	MGP_WTSI_9_83208546	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261030905					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378276715	MGP_WTSI_9_83208546	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:83196992 () rs orientation: forward

Symbol	Name	Function Class
D9Mit265	DNA segment, Chr 9, Massachusetts Institute of Technology 265	517 bp proximal
Gm46122	predicted gene, 46122	1769 bp upstream
Rr683867	regulatory region 683867	1393 bp proximal
Rr683868	regulatory region 683868	1819 bp proximal