rs261031432 SNP Detail

Summary

• ID
  rs261031432
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66205364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATAGTCAT ATATATATAT
  TCCCCTCCTT CATTTCTCTT TCGTGTCCTC TTTGTCCTCT TCTTCCTCCC ATTATCTCTT
  CTCTCTCTCT TCCTCTCATA AATTTCATTA GTGTTGCCCA CAGGAGCATG CGGTGAGCAG
  TTATTTACAG AAACATAGAC ACCTTACCAT TGGCTCTATC ACCTAAGAAA ATGGGGTAGT
  R
  TACTTGAAAA CAGGTGTGAG GGTCCTAGGT CCAGAGGCAG TGAAGCCCAC CCTGCTTGAC
  TGGGTCCCAA GTGCGTGGGA GCCATGCTTA GGCTTTACGA ATTCAGGGAC AGCAGAGGCC
  TTCGGGATTA CTGATGTATC ATTGTCTCAT TCTTAACCCG CTTCTGTTTC CTCCATCTGT
  CTGCCAAGGG ACCAGCAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367253	MGP_WTSI_14_66586752	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261031432					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367253	MGP_WTSI_14_66586752	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66205364 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	729 bp upstream
Cpgi6638	CpG island 6638	553 bp proximal
Rr290025	regulatory region 290025	237 bp proximal
Rr297400	regulatory region 297400	236 bp proximal
Tssr126237	transcription start site region 126237	576 bp upstream
Tssr126238	transcription start site region 126238	596 bp upstream
Tssr126239	transcription start site region 126239	618 bp upstream
Tssr126240	transcription start site region 126240	629 bp upstream
Tssr126241	transcription start site region 126241	646 bp upstream
Tssr126242	transcription start site region 126242	679 bp upstream
Tssr126243	transcription start site region 126243	688 bp upstream
Tssr126244	transcription start site region 126244	698 bp upstream
Tssr126245	transcription start site region 126245	718 bp upstream
Tssr126246	transcription start site region 126246	736 bp upstream
Tssr126247	transcription start site region 126247	1799 bp upstream
Tssr126248	transcription start site region 126248	1826 bp upstream
Tssr126249	transcription start site region 126249	1886 bp upstream