rs261037524 SNP Detail

Summary

• ID
  rs261037524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14949839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGAATGG CTGTTAGTCT
  CACTAAAAAC TTAATACTTT AATGACTATG AAACTATCTA CTTATTTCAT TAATTATTGA
  ATAAATCATA TATTTCTTTG TAAAATATAT TAACTAGCTA GATTTAGTGT AAATCAAATG
  CTTTGTCATT TTGTTTTAAA ATTTTGTTCT GATTTATCTC AAAGACTTTT TGTTATCATA
  R
  TTGGAACATG TCTTAGTAAC TTTATATGTT TTTTTTCTGA TTATGTTATA TATACCCATA
  TATATGAATA TATGTGTGTA TATGTACATA TGAATATGTA TATGTACATA TGAATATACA
  TACATATATA CATAAATTTC CCCCACCTCC TGGGTTAGAA GGAAGTACAT TTCTTCCCTC
  TAAAAACATG AATACATAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357061037	MGP_WTSI_3_14884779	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261037524					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357061037	MGP_WTSI_3_14884779	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14949839 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	1494 bp upstream
Cpgi12992	CpG island 12992	1236 bp proximal
Rr573721	regulatory region 573721	1595 bp distal
Rr573722	regulatory region 573722	1208 bp proximal
Rr573723	regulatory region 573723	1360 bp proximal
Rr573724	regulatory region 573724	1660 bp proximal
Rr573725	regulatory region 573725	1707 bp proximal
Tssr826	transcription start site region 826	1425 bp upstream
Tssr827	transcription start site region 827	1639 bp upstream
Tssr828	transcription start site region 828	1655 bp upstream
Tssr829	transcription start site region 829	1745 bp upstream
Tssr830	transcription start site region 830	1826 bp upstream
Tssr831	transcription start site region 831	1847 bp upstream
Tssr832	transcription start site region 832	1936 bp upstream
Tssr28466	transcription start site region 28466	1904 bp upstream