rs261037546 SNP Detail

Summary

• ID
  rs261037546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173421953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAAACCA GAGAACACAG
  AGCAGGGCAG AAACAGGTCC AGACCCATAA TCAAACGTTT ACAGAACACA GAATCATTAA
  TTAATGAAAA ATGTTTAAAC TGTACAGCAT CCTTTTGTTC ATCTGAAATT CAAAACTAGG
  AAATCTAAGT TCTGTGTACT TAAGCCAATG TAGAGTACAT AACTCCCCAA ATCAATGGAA
  Y
  CTGTAGAAAG TTCTCGTTAA AAGTATGGCT TCTTTTCTTA TCTTTCTTCT TTCTTTCCTT
  TTTTCTTTCT TTCTTTTTTA TTTTTGAGTC TAAAGTATAA CCAGTATCCA TGTACCTCAG
  GCATCGGTCC CTACACCACC CACCGAATCC CTGGACATGT CCACATTAAA GCAACCTTAT
  GACTCTAGCT ACTGTCAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320625303	CHEV_2_173405661	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261037546					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173421953 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	1887 bp upstream
Cpgi12846	CpG island 12846	1345 bp distal
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	881 bp downstream
Ppp4r1l-ps	protein phosphatase 4, regulatory subunit 1-like, pseudogene	1039 bp downstream
Rr571986	regulatory region 571986	1329 bp distal
Tssr27995	transcription start site region 27995	1980 bp upstream
Tssr27996	transcription start site region 27996	1961 bp upstream
Tssr27997	transcription start site region 27997	1949 bp upstream
Tssr27998	transcription start site region 27998	1882 bp upstream
Tssr27999	transcription start site region 27999	1826 bp upstream