rs261039670 SNP Detail

Summary

• ID
  rs261039670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103244524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCCGCCG CCGTCGCCGT
  CGCCGGAGCT GCTAGAGCTG CCGCCGCTGC TCCCGCTCAC TGCCGTCTCC TCTGCCTCTG
  CTCCATGCGC GGGGCCCGCC AGGTGGACGC GCCTCGCTCC GCTCGCTCAC TCTGGCTCCG
  CCGCAGCCGC CGCACTAGAT GGAGGCAGAG CTGTCGGGCT CGGGCGCCGA AACTCAGAGG
  Y
  TCCACAGCCG CCCGCCGGCT CCCAGGACAG CGCTCCTCTC ACCGCGCCGC TCGCCCGCGC
  CAGCACTGCC CGGCTCGCCG GCTGCGCGCG GCGGTGCCCG GAGCCCGCTC TGCACGCGGT
  GGCTGCGGCT GTCCGCGAGA CGGAGACGCG GAGGGCGGTT GCGACTGCCG CTAGCGCTGG
  GAACACTACT GCTAAACGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404216950	MGP_WTSI_X_101396257	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs261039670					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404216950	MGP_WTSI_X_101396257	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103244524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22895	CpG island 22895	within coordinates
Nexmif	neurite extension and migration factor	within coordinates
Rr693074	regulatory region 693074	within coordinates
Rr693075	regulatory region 693075	189 bp proximal
Tssr161734	transcription start site region 161734	71 bp downstream
Tssr163977	transcription start site region 163977	181 bp downstream
Tssr163978	transcription start site region 163978	208 bp downstream
Tssr163979	transcription start site region 163979	260 bp downstream