rs261040193 SNP Detail

Summary

• ID
  rs261040193
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCTTCGA ATCAGTTCTT
  GCATAAAGTC AAAGACTCTC CTACATTAAA CAAGCCATAG GTTGGAATAT GATTTTTCCA
  ATAAGGAATA TGAAGAGAAA CTCAGACTTT TATTTTATTT CGGTTTTTCA AGACAGGATT
  TCGATGTGTC GCCCTGGCTG TCCTGGAACT TACTCTGTAG ACCAGGTGGG CCTCGAACTC
  K
  AACTCAGAAA TCCGCCTGCC TCTGCCTCCC AAGTGCTGGG ATTAAAGGGT GTGCCACTGC
  CTGGCAGGAG CTCAGAGTTA CTGTAACATC TTTGTACCTT ATTTTGGATC TGTGTTTCGC
  CATATTCTCA GGTCAGTTGT TGGTGGGGGT GGTGGAAGAA AAGCAAAGAA CCATCTACGG
  AAGAGGTGTT TGATGTCTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323535816	CHEV_10_128183137	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261040193					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581950 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1858 bp distal
Cpgi2419	CpG island 2419	1621 bp proximal
Dgka	diacylglycerol kinase, alpha	1226 bp upstream
Gm31504	predicted gene, 31504	199 bp downstream
Gm66065	predicted gene, 66065	within coordinates
Pym1	PYM homolog 1, exon junction complex associated factor	1808 bp upstream
Rr224483	regulatory region 224483	within coordinates
Rr224484	regulatory region 224484	1250 bp proximal
Rr385481	regulatory region 385481	1244 bp upstream
Rr402364	regulatory region 402364	1132 bp downstream
Tssr96440	transcription start site region 96440	1259 bp downstream
Tssr96441	transcription start site region 96441	1058 bp downstream
Tssr96442	transcription start site region 96442	847 bp downstream
Tssr96443	transcription start site region 96443	376 bp upstream
Tssr96444	transcription start site region 96444	1707 bp upstream
Tssr96445	transcription start site region 96445	1769 bp upstream
Tssr99945	transcription start site region 99945	1996 bp upstream
Tssr99946	transcription start site region 99946	1972 bp upstream
Tssr99947	transcription start site region 99947	1829 bp upstream
Tssr99948	transcription start site region 99948	1799 bp upstream
Tssr99949	transcription start site region 99949	1194 bp upstream
Tssr99950	transcription start site region 99950	1023 bp upstream
Tssr99951	transcription start site region 99951	1000 bp upstream
Tssr99952	transcription start site region 99952	996 bp upstream
Tssr99953	transcription start site region 99953	959 bp upstream
Tssr99954	transcription start site region 99954	615 bp upstream
Tssr99955	transcription start site region 99955	582 bp upstream
Tssr99956	transcription start site region 99956	152 bp downstream
Tssr99957	transcription start site region 99957	219 bp downstream
Tssr99958	transcription start site region 99958	1547 bp downstream
Tssr99959	transcription start site region 99959	1639 bp downstream