rs261041994 SNP Detail

Summary

• ID
  rs261041994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:79705184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACAGAGA AAACCTGTCT
  TAACAAAAAG AAGAAAAAAG AAAAGGAAAA TGTCGTCACA TGTGCTGGCA CACATCTGTA
  ACCCCAGCAC TCAGGAGGCA GAGGTAGGCA GGAGGAATCT GTGAGTTTGA GGCTCACCTG
  GTCTACAGAG CAAGTTCCAG GACAGCCAGG ACTACACAGA GGAACCCTGT CTGCGGGGGT
  R
  GGGGTGGGAG GGTTGGGAGG TTGGGTGGGG GAAAACAACC TAGAAAGAAA AGAAAAAAGG
  AAAGGAACAT ATCTGGTCTC AGTTGGTAGA TTGCTTGTCT AGCGCACAGG GAGCCTTGAG
  TGCATCCTTA GGACATGACA CCTGTAATCC CACCATAGGG GATGAGGGGA TGGTGGGAGT
  GGAGGGAGGA GGGATTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372037565	MGP_WTSI_7_87200322	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261041994					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372037565	MGP_WTSI_7_87200322	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79705184 () rs orientation: forward

Symbol	Name	Function Class
Rr649768	regulatory region 649768	1943 bp distal
Rr649770	regulatory region 649770	313 bp proximal
Tssr73200	transcription start site region 73200	746 bp downstream
Zfp710	zinc finger protein 710	Intron