rs261051865 SNP Detail

Summary

• ID
  rs261051865
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6364884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGGCTT TTACATAGGT
  GCTGGGGATC CAAACGCAGG TAGGTCCTTG AGCTTGTCCT GCAAGCACTT AACAGTTTTG
  AGAAAAGCAG GTTTACATGA TGCTATATGC ACAAAGCACA CTGGTACAGA ATTTTCCAGT
  TTGGCAAATC AAAACTCTTT GTAGTTCAAC CTAATGTGCT TTTGGTCTGA TTCATCCAAA
  K
  AAGGCATGGC CAGACCCACA TTCCTGAGGT TCTGTGTCTA AAGGCCTTAC AGCTCGGGAG
  CCAACTCCAG CAGACGCTAT GGTGAAGGGT CTTCCACAGC ACCGACTTTC CCATACTCAG
  GCTTTGTTTA TGAGGCAGGG CCTCACACTT ACAGCTCAGG CTGTATGGAA CTCACTATCC
  TCCTGTCTCC ATCTACCTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382296428	MGP_WTSI_11_6314887	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261051865					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382296428	MGP_WTSI_11_6314887	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6364884 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2558	CpG island 2558	418 bp proximal
Gm71788	predicted gene, 71788	309 bp downstream
Ppia	peptidylprolyl isomerase A	983 bp upstream
Rr246944	regulatory region 246944	within coordinates
Rr402411	regulatory region 402411	893 bp upstream
Tssr100250	transcription start site region 100250	890 bp upstream
Tssr100251	transcription start site region 100251	919 bp upstream
Tssr100252	transcription start site region 100252	946 bp upstream
Tssr100253	transcription start site region 100253	1343 bp upstream
Tssr100254	transcription start site region 100254	1374 bp upstream
Tssr100255	transcription start site region 100255	1445 bp upstream
Tssr106715	transcription start site region 106715	765 bp downstream