rs261056060 SNP Detail

Summary

• ID
  rs261056060
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170898537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGAAGT CGAGGCGCGG
  GAACCACACC ATGAGCTTGT GGCTCTGCAG CGGACATCTG CTCCGCAATA ACAATTGCCC
  ACTGGAACCC CTTCCGACCC TGCAACCGTC CCTCTCTCCG TGCCACCACC ACCACCACCA
  CCAAGACCAC CACCAGCACC GTATTCCATT CTCCGACATC TCCTATTCAT AGTCCAAAAA
  M
  CAAAAAAACA AAACAAACAA ATATACATAA TACACAGAGT TGTGTGTGTG TGTGTGCGTG
  TGTTGTCTGT ATGTGTGTGT ATTGATAGAT AGATATAGAT AGATACCTAT ACCTTTCATA
  TATGGTTATA TGTTCATATA TATGGGTATA TATAAAAGAT TAATGCGTGT GCGTGTGCGT
  GTGCGTGTGT GTGTGAAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	NZW/LacJ	SPRET/EiJ
ss352379502	MGP_WTSI_1_173001099	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	NZW/LacJ	SPRET/EiJ
rs261056060					SNP	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352379502	MGP_WTSI_1_173001099	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170898537 () rs orientation: forward

Symbol	Name	Function Class
Gm56232	predicted gene, 56232	1258 bp downstream
n-TEctc8	nuclear encoded tRNA glutamic acid 8 (anticodon CTC)	824 bp downstream
n-TGtcc5	nuclear encoded tRNA glycine 5 (anticodon TCC)	1366 bp downstream
Rr423202	regulatory region 423202	525 bp distal
Rr423203	regulatory region 423203	628 bp proximal
Rr423204	regulatory region 423204	1511 bp proximal