rs261059582 SNP Detail

Summary

• ID
  rs261059582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119232165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTGGGCA TCTAATTGGG
  GGCGGCTGGG TTGGGGCTGC TCGCCCCTGA GAGTCATAGG TGTCGCAAAG CGAAGCGGAC
  GGCTTTCCAT AGCCCGCCCG GAGTCCTCTG CATCCCGTCC CGCCACTCCG CGTCGCGATC
  CTCATGCGAG TGGCTCCTAC CTGCGCCCGC TTTTCTTGCA GCGGGCCGCA GATGCGCCCT
  Y
  GTGGGACCGC TTTTGTTTTG GGCAACTGGG AGTGGAGAAG GGTTGAAGAG GCGAACCAAC
  AGGTCTCAGA TCGCTTCGGC CGGCACGTGG CGGGCGTGAG TGACCCGCGG TCAGCTCGCA
  GCCGCCTGCG GGCTGTGGAT AGCTGGTGCG CGTCTGCTTG GGACTAGAAG GTGTGGGTGT
  GTACGCACGA AGTTGTGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323219423	CHEV_9_119312217	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261059582					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119232165 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	within coordinates
Cpgi22474	CpG island 22474	within coordinates
Gm53515	predicted gene, 53515	1201 bp upstream
Gm69683	predicted gene, 69683	1631 bp upstream
Rr688480	regulatory region 688480	1642 bp distal
Rr688481	regulatory region 688481	645 bp distal
Rr688482	regulatory region 688482	1115 bp distal
Rr688483	regulatory region 688483	within coordinates
Rr688484	regulatory region 688484	558 bp distal
Rr688485	regulatory region 688485	398 bp distal
Tssr87682	transcription start site region 87682	946 bp downstream
Tssr87683	transcription start site region 87683	874 bp downstream
Tssr87684	transcription start site region 87684	830 bp downstream
Tssr91983	transcription start site region 91983	376 bp downstream