rs261059859 SNP Detail

Summary

• ID
  rs261059859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13251874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTTTCT CTAGGTTTTG
  AGACTACTGT AAGACAGATG AGAAAACCTG AGGTTTGTAT TGCTTTCCCT CCTCCTTGCT
  TTGACCAAAC TCTGCTGAAC AAGGATTCTC TACCAAAGCC TTGGTGCCTC CATCTTTCTT
  TCTTTTATTT TGTATTTATT TATTTATTTT ATTCTTTTTA CTTTCTTTTA TTGGGGGGGG
  R
  CAGTGTCTCA CTGTGTAGCT CTGGTTGGTC TGGAACTCAC TATGAACACC AGGCTGGTAT
  TGAACTCAGA GAGATCTACC TGTGCCTGCC TAACACACAC ACACACATCC TGAGCAATGG
  GAATAAAGGC ACATGCCACC ATATCTAGCC CCATCTTTCT TTTAGAATAC AGCAAGAAAT
  GAACCTGAAA ATCCAGTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss373740687	MGP_WTSI_8_13201874	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs261059859					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373740687	MGP_WTSI_8_13201874	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13251874 () rs orientation: forward

Symbol	Name	Function Class
2810030D12Rik	RIKEN cDNA 2810030D12 gene	84 bp downstream
Cpgi20110	CpG island 20110	440 bp distal
Gm56825	predicted gene, 56825	within coordinates
Grtp1	GH regulated TBC protein 1	1179 bp upstream
Rr659873	regulatory region 659873	910 bp distal
Rr659874	regulatory region 659874	391 bp distal
Rr659875	regulatory region 659875	161 bp distal
Rr659876	regulatory region 659876	within coordinates
Rr659877	regulatory region 659877	349 bp proximal
Rr659878	regulatory region 659878	1850 bp proximal
Rr659879	regulatory region 659879	1941 bp proximal
Tssr76386	transcription start site region 76386	1087 bp downstream
Tssr76387	transcription start site region 76387	903 bp downstream
Tssr80428	transcription start site region 80428	1238 bp upstream
Tssr80429	transcription start site region 80429	446 bp upstream