rs261069084 SNP Detail

Summary

• ID
  rs261069084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32609819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTTAAA AAAAAAAAAA
  AAAAGAAAAA AGAAAAAGTT TCCAAGCCAC TGACCTTCAG CACAACAAAG CAACAAAATT
  TCATTTGGTC CAAGAAATTA AGAGTCTTCT GCCATTCACT ATGATATATA TATATATATA
  TATATATATA TATATATATA TATATATCAC TATATATATT TCACTATATA TATACACACA
  Y
  ACACACACAC ACACATATAT ATATCTCACT ACACTTTCTT AGACAAAATA AAGAGCAATG
  ATTTGTTGAT TATTATAACT TTTTGAAGTA TTTTTTTCTG GACTGTACTG CATTTATGTA
  AATATGCCCA TACCTCGGAT GAGAATCCAG AGGCACCAAC ACGTTAAGAC AATTAGGCAA
  AATTCTGCAC GGAGCCAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	ZALENDE/EiJ
ss377132799	MGP_WTSI_9_32506108	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	ZALENDE/EiJ
rs261069084					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377132799	MGP_WTSI_9_32506108	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32609819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21544	CpG island 21544	1979 bp distal
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr206170	regulatory region 206170	218 bp distal
Tssr84276	transcription start site region 84276	1647 bp downstream
Tssr84277	transcription start site region 84277	1512 bp downstream
Tssr84278	transcription start site region 84278	584 bp downstream
Tssr84279	transcription start site region 84279	249 bp downstream
Tssr84280	transcription start site region 84280	887 bp upstream
Tssr84281	transcription start site region 84281	1288 bp upstream
Tssr84282	transcription start site region 84282	1367 bp upstream
Tssr84283	transcription start site region 84283	1747 bp upstream