rs261072731 SNP Detail

Summary

• ID
  rs261072731
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101901438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCTCCT GAGCTCTGAA
  TGCCTTGGGT TTGCCTCACC TTTGTCCAGG AGGGAGAACT TTCTCAGATA TCTGTCTGAT
  GGAATATAGA ACTATTCGAT CTGAAGCATC CAGTGGAGGA GTTAAAAATC CTAGGACTAA
  GTTTCAGAAG ACCCTGAACT CTGGACTCTG CCAGTCAGAC TAGAACAATC TTAGGCCACG
  R
  CCTTACCCAT TTCTGAGTCT CAGCTTCCCC CACTGGAAAA CAAGGGGTTG GAGCAGATGA
  TACCCTTTGG CTCTGACCTT CTGTGATGCA CTCTTGAGAA TAATAATTAA GTAATTGAAG
  TTTATGCATG TAGCATATTG CTCATAGTTC CTTAATATCA CTTAGGTCAT CCTGTTTTGA
  GATCTAGTAA ATTGTATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353680	CHEV_7_109400745	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261072731					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101901438 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	1247 bp distal
Rr652563	regulatory region 652563	1618 bp distal
Rr652564	regulatory region 652564	1289 bp distal
Tssr2354	transcription start site region 2354	1955 bp downstream
Tssr68330	transcription start site region 68330	1976 bp downstream
Tssr73946	transcription start site region 73946	1897 bp upstream
Tssr73947	transcription start site region 73947	1752 bp upstream
Tssr73948	transcription start site region 73948	1716 bp upstream
Tssr73949	transcription start site region 73949	1683 bp upstream
Tssr73950	transcription start site region 73950	1636 bp upstream