rs261081209 SNP Detail

Summary

• ID
  rs261081209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85535014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCGTGGT TTCTCCTCCT
  CCAACCCGTC TGGGAGCAAA CCCAGTTTGT CATGCTTGGC GGCAAGCCCC TCTCCCTATT
  GAGCCATATT GAGGCCCACT CTTGATGGGA AGAGCCAATC TGGCAGATGA AACCAAAACC
  AAAATAAAAC ACCAAATAAC TCTAGCTGTT TTCTCTCTGT GGCTTGTTTC TGAGCACTTG
  Y
  TTCATGTGGA TGTAGGGAAA CAGTTTTGTC ATTTTTCTTG CCAGGGCTGC TTTTCAAGAC
  CTACTGCCTC TTCTCTTTCC AACCAGATTT CAAGTCCCAT CTTTGAGATA AGTTTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCCCCC
  CTTTTGTATA ATTTAGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386736598	MGP_WTSI_12_86829190	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261081209					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386736598	MGP_WTSI_12_86829190	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85535014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4899	CpG island 4899	1766 bp distal
Cpgi4900	CpG island 4900	1111 bp distal
Gm60138	predicted gene, 60138	37 bp downstream
Rr369567	regulatory region 369567	1165 bp downstream
Rr403417	regulatory region 403417	168 bp downstream
Rr469912	regulatory region 469912	1808 bp distal
Rr469913	regulatory region 469913	1048 bp distal
Rr469914	regulatory region 469914	632 bp distal
Rr469915	regulatory region 469915	17 bp distal
Rr469916	regulatory region 469916	408 bp distal
Rr469917	regulatory region 469917	296 bp distal
Tssr3900	transcription start site region 3900	387 bp upstream
Tssr114406	transcription start site region 114406	1991 bp downstream
Tssr114407	transcription start site region 114407	1950 bp downstream