rs261088278 SNP Detail

Summary

• ID
  rs261088278
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58158483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGGTCC TGAGTTCAAT
  TCCCAGCAGC CACATGGTGG CTCACAAGCA TCTGTAATAG AATCTGATTC CCTCTTCTGG
  TGTGTCTGAA AACAGCTACA GTGTACTCAT ATAAATATTT TGAGTAAATA TTTTAAAAAA
  TTAGGCCAAG ATCAGTTATA TTGTGTACAA ATATTTGTGT TTTCTTTCCT CAATTTTTTA
  W
  ATTATGTGAT GTAACATCTA TTAATAGAAT GTCAATGGTT ATCATATTGA AGTCTGAGAT
  ACTAATAGAA TGTTTCTAGG GGGCTGGTGA GATGGCTCAG GGGTTAAGAG CACTGACTGC
  TCTTCCAGAG GTCCTGAGCT CAATTCCCAG CAACCACATG GTGGCTACAA CCATCTGTAA
  TGGGATCTGA TGCCCTCTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377705020	MGP_WTSI_9_58099007	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261088278					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377705020	MGP_WTSI_9_58099007	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58158483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21845	CpG island 21845	1818 bp proximal
Pml	promyelocytic leukemia	1414 bp upstream
Rr401408	regulatory region 401408	1752 bp upstream
Rr679902	regulatory region 679902	924 bp distal
Rr679903	regulatory region 679903	1061 bp distal
Rr679904	regulatory region 679904	116 bp distal
Rr679905	regulatory region 679905	187 bp proximal
Rr679906	regulatory region 679906	1508 bp proximal
Stoml1	stomatin-like 1	1964 bp upstream
Tssr85378	transcription start site region 85378	1975 bp upstream
Tssr89890	transcription start site region 89890	1560 bp upstream
Tssr89891	transcription start site region 89891	1528 bp upstream
Tssr89892	transcription start site region 89892	1409 bp upstream