rs261095942 SNP Detail

Summary

• ID
  rs261095942
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142418551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGAGTCC CCTATGTCTC
  TGGCCCACCA TGGCCAGTGT TGCAAGTAGT ACAAACCTTT GTTGGTCACC TCCCAAGAAA
  CTTCAAAAAG CAGTAAGTCT TCCACAGGGA GTCTTTCAGC TTCCCACACA GGGAGCCCAC
  CAAGGGATGT CACCGACAAG GAGCGGCCTC TGAGCATTCT TCTTCCAGCT GTGTGGTGCC
  S
  TTTGGGACCT GATTCAGCTG ACTGCAGTCA GCACTGAGAA AAAGCAGCAG CCTTGGGATA
  GCCTCTACAG GGTGAGCCAG CAATCTGAGG TCACATGAAC CCAGCGCAGC TGGATGAAGC
  GTGCCCAGCT CCTTGCTGCC TTTCAGGAGA GGGCAGTGCC TCACAGTTAT AATCCACACA
  GACACCCAAA AACAAAAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322044836	CHEV_6_142421345	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261095942					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142418551 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Rr640649	regulatory region 640649	1273 bp distal
Rr640650	regulatory region 640650	within coordinates
Rr640651	regulatory region 640651	274 bp proximal
Tssr63950	transcription start site region 63950	20 bp upstream
Tssr63951	transcription start site region 63951	within coordinates
Tssr63952	transcription start site region 63952	19 bp downstream
Tssr63953	transcription start site region 63953	72 bp downstream
Tssr63954	transcription start site region 63954	135 bp downstream
Tssr63955	transcription start site region 63955	164 bp downstream
Tssr63956	transcription start site region 63956	250 bp downstream