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rs261096104 SNP Detail
Summary
  • ID
    rs261096104
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:131196849 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCTCTAGGT GAGCTGGAAG
    GGTGCTTGTT CCCGGTTAGT GAGACTAATG ATGCTACCCA CCTTGTCATT TGCTCCGTTA
    GGTGAATTGC GTCCTGGCAA GGATGAGAAA CCGGAACCAG AATGACTCTG AAAGAGTGAC
    TCTCCACTTA AATGAACCTG TGCGTTTCTG TTGCCTTGGG GCACAAGTGT CCATATGTGT
    S
    TGTGCCCCCC AACCCCCATC CCCGGCCCCG GCTGATCTTA CCAATTAGGT TGCAGGAAGG
    GTTGCTTCTG TCTAAAAATG GCCAAGGATC AGCATTTCTT TGGAGTCGTT TCCACACCTT
    GTAGCAGTTT TCAGTCAACC ACGGTCGTTT TGGAGGGTGT CACTAGGCAT CCAGGCAGCT
    GGCTAAACCT CCAATGAGTT                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss359739314 MGP_WTSI_3_131154052 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261096104 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359739314 MGP_WTSI_3_131154052 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:131196849 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13839 CpG island 13839 150 bp distal
Gm36753 predicted gene, 36753 within coordinates
Rr585351 regulatory region 585351 684 bp distal
Rr585352 regulatory region 585352 within coordinates
Rr585353 regulatory region 585353 402 bp distal
Rr585354 regulatory region 585354 1461 bp proximal
Sgms2 sphingomyelin synthase 2 within coordinates
Tssr1055 transcription start site region 1055 1359 bp downstream
Tssr1056 transcription start site region 1056 1057 bp downstream
Tssr31735 transcription start site region 31735 1335 bp downstream
Tssr31736 transcription start site region 31736 683 bp downstream
Tssr31737 transcription start site region 31737 471 bp upstream
Tssr35709 transcription start site region 35709 1331 bp upstream
Tssr35710 transcription start site region 35710 1314 bp upstream
Tssr35711 transcription start site region 35711 1152 bp upstream
Tssr35712 transcription start site region 35712 1122 bp upstream
Tssr35713 transcription start site region 35713 853 bp upstream
Tssr35714 transcription start site region 35714 593 bp upstream
Tssr35715 transcription start site region 35715 557 bp upstream
Tssr35716 transcription start site region 35716 422 bp upstream
Tssr35717 transcription start site region 35717 346 bp upstream
Tssr35718 transcription start site region 35718 320 bp upstream
Tssr35719 transcription start site region 35719 77 bp upstream
Tssr35720 transcription start site region 35720 31 bp upstream
Tssr35721 transcription start site region 35721 187 bp downstream
Tssr35722 transcription start site region 35722 239 bp downstream
Tssr35723 transcription start site region 35723 298 bp downstream
Tssr35724 transcription start site region 35724 311 bp downstream
Tssr35725 transcription start site region 35725 349 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory