rs261102873 SNP Detail

Summary

• ID
  rs261102873
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:44885891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATCTAAC TGCATTCTCG
  GGCGGATTTG GTCCCATATT GCACTTTGCA TACAAATGAG CCTGTTATTA GTGTTATTTG
  GAAAATCGTG TAAGGTATGT GTGTTGGAAG CTAAGTTGCA ATCCAGAGTA CGATTATGGC
  GATCTTCTAG CACTGGCACA TCATTTAATA TATGTGGCCC TTTTGGCTTA TCTAGCTTGC
  W
  ACATGACCCA GTTGGGAATC ATGTTACTGG GAATGCATTT ATTGGTATTG ACTTTTATAA
  AGAGGCTGGT TTTGGTTCTA AAGATTCATG GTTTCTAGTT TGAGGGGAAA AACATAGCTC
  ATGTAAAAGT ATATGTGTGC CTGAGTGAAT GCATGTTAAT ACGAATAATT TCTCCCTGAA
  AACTGGGTTT CTGAGATTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388465239	MGP_WTSI_13_44827784	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261102873					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388465239	MGP_WTSI_13_44827784	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44885891 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5525	CpG island 5525	989 bp distal
Cpgi5526	CpG island 5526	795 bp proximal
Jarid2	jumonji and AT-rich interaction domain containing 2	within coordinates
Rr369688	regulatory region 369688	1699 bp downstream
Rr403743	regulatory region 403743	1027 bp downstream
Rr403744	regulatory region 403744	385 bp upstream
Rr478587	regulatory region 478587	1134 bp distal
Rr478588	regulatory region 478588	1195 bp distal
Rr478589	regulatory region 478589	1162 bp proximal
Tssr119539	transcription start site region 119539	1817 bp downstream
Tssr119540	transcription start site region 119540	1599 bp downstream
Tssr119541	transcription start site region 119541	1508 bp downstream
Tssr119542	transcription start site region 119542	1379 bp downstream
Tssr119543	transcription start site region 119543	1139 bp downstream
Tssr119544	transcription start site region 119544	1123 bp downstream
Tssr119545	transcription start site region 119545	1074 bp downstream
Tssr119546	transcription start site region 119546	1042 bp downstream
Tssr119547	transcription start site region 119547	832 bp downstream
Tssr119548	transcription start site region 119548	677 bp downstream
Tssr119549	transcription start site region 119549	554 bp downstream
Tssr119550	transcription start site region 119550	1619 bp upstream