rs261106476 SNP Detail

Summary

• ID
  rs261106476
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3688565 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GCTTGTGTTT CAGTGATCCC
  TACTTTACTT ATTGATGGTC CTGATGTCCA AGTGTCCAAG AGTAAGGATA CATAGGCCTT
  TTATTTCACT GTATTGTTAG AACAGTTAAT TGAATATATA TATATATATA TATATATTGT
  TTTTCGAAAC AGGGTTTCTC TGTGTATCCC TGGCTATCCT GGAGCTCACT CTGTAGAACA
  S
  GCTGAACTTG AACTCAGAAA TCCTCCTGCC TCTGCCTCCC AAGTGCTGGG ATTAAAGGCA
  TGCGCCACCA CTGCCCAGCT AATATATATA TATATATATA TATATATATA TATATATATA
  TATATAACAA TTAATCTTAT TAATGGCCCT CACTATTTTC TTAATATACT TACTTTATAA
  ATCATCCTCT CTCATCGGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	I/LnJ	KK/HlJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss379331506	MGP_WTSI_10_6607976	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	I/LnJ	KK/HlJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs261106476					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379331506	MGP_WTSI_10_6607976	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3688565 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1270	CpG island 1270	1651 bp proximal
Gm30164	predicted gene, 30164	within coordinates
Plekhg1	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	1799 bp upstream
Rr222570	regulatory region 222570	1226 bp distal
Rr224667	regulatory region 224667	1235 bp proximal
Tssr92214	transcription start site region 92214	1688 bp upstream
Tssr92215	transcription start site region 92215	1783 bp upstream
Tssr92216	transcription start site region 92216	1888 bp upstream