rs261108788 SNP Detail

Summary

• ID
  rs261108788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16677437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCTGTCA CCATTTCACA
  GAGAAGCAAA CAGATCAGGG AAAGTTCTAG AAGATTCTCG AAGTTGCTGC TGAGAAAGCA
  ATAAGGATAG AATATAAATC CAACAGATAG TCTATTCAAC TCATAGAGGG AGGGACAGGC
  AGCTCAAGGG CCTTTAAAGC AATGGACCAT GGGTATGGTG GTAGGTGAGA GCTGACCTAA
  R
  AGTTGTCCTC TGACCTCCAT ACATATGCTG TGCACAGGCA TGCCCCACCG CACATGCATC
  GTACATATGC ACACACACAC ACACACACAA ATCATAAATA AAACAAAAAT TTCAAAATAA
  AAAATTTGGA ATATCTGGGT ACAGTGGCTC ACACCTATGA TCCCAGCATT CTGAGGCAGG
  AGGATTACCA GGACTTTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370704046	MGP_WTSI_7_17528861	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	A	A	A	A	G	A	G	G	A	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	G	G	G	A	A	G	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261108788					SNP	G	G	G	A	A	A	A	A	G	A	G	G	A	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	G	G	G	A	A	G	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370704046	MGP_WTSI_7_17528861	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16677437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	942 bp proximal
Gm71929	predicted gene, 71929	1780 bp downstream
Pnma8b	PNMA family member 8B	1170 bp upstream
Rr368243	regulatory region 368243	944 bp upstream
Rr642821	regulatory region 642821	143 bp distal
Rr642822	regulatory region 642822	680 bp proximal
Rr642823	regulatory region 642823	1093 bp proximal
Tssr64660	transcription start site region 64660	1133 bp upstream