rs261114005 SNP Detail

Summary

• ID
  rs261114005
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138116629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGCATAG TTGACTGCTT
  CCCTTCCATT ACATGGACAC CAGTCTCAAA ACAGGCAGCA GGTCGGTTGC ATTTGTTACC
  CACTGAGCCA TCTTGTCAGT TGAGTTAAAC CTTTAGATAG GGGCTGGAGA GATGGCTCAG
  TGGTTAAGAG CACTACTGGC TGCTCTTCCA GAGGTCCTGA GTTCAAATCC CAGCAACCAC
  W
  TGGTGGCTCA TGGCCATTTG TAATGTGATC TTATGCCCTC TTCTGGTGTG TCTGAAAACA
  GCAACAGTGT ACTCTTAGAC ATAAAATAAT ACATGAATCT TTAAAAACAA AACAAAACAA
  CCTTTAGATA GCTTTGGTTT TGCTTTTTTG TTATTTTTCA AAACAGGGTT TCTTTGTGTT
  GCCCTGTCTG TCCTGGAACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366890369	MGP_WTSI_5_138559595	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	A	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261114005					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	A	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366890369	MGP_WTSI_5_138559595	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138116629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16853	CpG island 16853	1086 bp distal
Gm71396	predicted gene, 71396	887 bp downstream
Rr399441	regulatory region 399441	1242 bp downstream
Rr623030	regulatory region 623030	1316 bp distal
Rr623031	regulatory region 623031	419 bp distal
Rr623032	regulatory region 623032	30 bp proximal
Tssr49413	transcription start site region 49413	1381 bp downstream
Tssr54072	transcription start site region 54072	1499 bp upstream
Zscan21	zinc finger and SCAN domain containing 21	within coordinates