rs261117722 SNP Detail

Summary

• ID
  rs261117722
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:146999852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTC CACATCAAAA AGAAAGGAAA
  S
  GAGACAGTTC CCCAGAACCC TCATG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321714910	CHEV_5_147874618	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261117722					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:146999852 () rs orientation: forward

Symbol	Name	Function Class
Lnx2	ligand of numb-protein X 2	within coordinates
Rr399514	regulatory region 399514	258 bp upstream
Rr624842	regulatory region 624842	161 bp proximal
Tssr54497	transcription start site region 54497	252 bp downstream