rs261126066 SNP Detail

Summary

• ID
  rs261126066
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78292130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACCCCC CATGGGTGGG
  ATATATAGGC TCACACTAAC TTAGGATGGC CTGGGCCTGT CCTATATGTC CTGATGGACT
  TCCAGAGAGC TACTCTCCCC TGGGATCCTG GCCCTTCAAG CACAAAGAAA CCTAGTCTCT
  TTCTGGTCTC TTCCCCTCAT GAGCACTCAT AGCCTAGCCT CTCTGACTCT CTTTCTGCTG
  M
  CTGGGGTCTT TTGTCATAAC TGTCAATCAA GCAGGGAGGG TAGTGACCTC AGACCTTTGA
  AGTCCCACCC CCTGGAAGTC TAAGGCCAGC TGTAGACTCA AGGGCCATTA GGAGAGTAAA
  GGAAGGAATA GCAGGTTTGC ATTCAACTTC CCTAAATGAT CATTCAAAGA AGCTGTTTAT
  AGGGTCAGTG GTGGCCCTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394653328	MGP_WTSI_15_78238360	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261126066					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394653328	MGP_WTSI_15_78238360	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78292130 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7286	CpG island 7286	985 bp distal
Cpgi7287	CpG island 7287	1942 bp proximal
Mpst	mercaptopyruvate sulfurtransferase	within coordinates
Tssr131943	transcription start site region 131943	1743 bp downstream
Tssr131944	transcription start site region 131944	1198 bp downstream
Tssr131945	transcription start site region 131945	1134 bp downstream
Tssr131946	transcription start site region 131946	1783 bp upstream
Tssr131947	transcription start site region 131947	1809 bp upstream
Tssr131948	transcription start site region 131948	1830 bp upstream
Tssr131949	transcription start site region 131949	1980 bp upstream
Tssr135216	transcription start site region 135216	1937 bp upstream
Tssr135217	transcription start site region 135217	1514 bp upstream