rs261137403 SNP Detail

Summary

• ID
  rs261137403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5915432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGACGCCT CCCCAGATGG
  CAGAAGACGG GTACATCGGT GCCACTTTAA TGGCTGCAGG AAAGTTTACA CGAAAAGCTC
  CCACTTGAAA GCACATCAGC GCACTCACAC AGGTCAGTCC CCTCTTGGGG CCTGGGTGGT
  CAGCTGCTGG TGGGCGCCCT CAGTCGATCA GCACTGGGAG GGAGCCAGGA CCCCCCCAGG
  R
  TGCGGTCACA AGCAAGACAG TCCTCACTTC CTAGATTCTT GTCTCTAAGG AATTGGGTCT
  TTTTTGGAGT TCAGAGTAGA ATCTTAAAAG ACTGGACATT TGAATCAGAT GAATGGTTCA
  TGCTTTCAGA TTAAACAGGA GGCCAGATCA CATTCTCCAT GGATACCCAA ACCTTCACCC
  ACTGGGTGCT CATTTCCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324224098	CHEV_13_5864679	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261137403					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5915432 () rs orientation: forward

Symbol	Name	Function Class
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr403559	regulatory region 403559	592 bp downstream
Tssr118246	transcription start site region 118246	1607 bp downstream
Tssr118247	transcription start site region 118247	1537 bp downstream
Tssr118248	transcription start site region 118248	936 bp downstream
Tssr118249	transcription start site region 118249	731 bp downstream
Tssr118250	transcription start site region 118250	665 bp downstream
Tssr118251	transcription start site region 118251	630 bp downstream
Tssr118252	transcription start site region 118252	572 bp downstream
Tssr118253	transcription start site region 118253	977 bp upstream
Tssr118254	transcription start site region 118254	1004 bp upstream
Tssr121319	transcription start site region 121319	1119 bp upstream
Tssr121320	transcription start site region 121320	1082 bp upstream
Tssr121321	transcription start site region 121321	1071 bp upstream
Tssr121322	transcription start site region 121322	1030 bp upstream