rs261150431 SNP Detail

Summary

• ID
  rs261150431
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:57551541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTGGGTC AGGCTGGAGA
  CTGCCAGTGT CCCTGGTAGT TACAGAGTGG GTCTGGTTCC CCTCCACCTC CAGCCATCCA
  TCATTGCAGA AGTGGGAATG AGAGACAGCT AGCCTCCCTC CATCAGGAGC CTGGAATATG
  ACCTGCCCCT TGGGCCTCAG TTCCCTGCTA TACAAAATGA TCAAAAAAAA AAAAAAAAAA
  M
  TCCTACTTAA GCTCCAAAGA TCCAGTGACT GGACACACCC CTTCCAAATA ACTGGTCTGG
  GTCCTGAGAA GCCTGGGAAA ATAGACTGAT GAGGATGCTG GGGGTGGGGG TGGGGGGAAC
  GGGGTACAGT ACCAATGCCC AGTGTCACCT CTACGCAGAC TGGAAGCCCT GCCCAGTTTC
  TCCACCCAAG GGTCAGAGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377693390	MGP_WTSI_9_57492065	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261150431					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377693390	MGP_WTSI_9_57492065	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57551541 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21828	CpG island 21828	447 bp proximal
Csk	c-src tyrosine kinase	Intron
Rr679715	regulatory region 679715	1714 bp distal
Rr679716	regulatory region 679716	1247 bp proximal
Rr679717	regulatory region 679717	1385 bp proximal
Rr679718	regulatory region 679718	1434 bp proximal
Tssr85319	transcription start site region 85319	1003 bp upstream
Tssr85320	transcription start site region 85320	1535 bp upstream
Tssr89801	transcription start site region 89801	18 bp upstream
Tssr89802	transcription start site region 89802	867 bp downstream
Tssr89803	transcription start site region 89803	896 bp downstream
Tssr89804	transcription start site region 89804	930 bp downstream
Tssr89805	transcription start site region 89805	1174 bp downstream
Tssr89806	transcription start site region 89806	1274 bp downstream
Tssr89807	transcription start site region 89807	1303 bp downstream