rs261153695 SNP Detail

Summary

• ID
  rs261153695
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167225365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCAAGA GCTGCTATCT
  CTTCTTCATC TCAGCACAGC CTCTTCTCTA GCTACAGGCC GGTGGACCTC TGTGTTCTAG
  CCAACATCCT AAACTCACTG TCATCTCCCC CAAGATGTTT ATAGATGGAA ACGATCATGT
  TAGCAAGGGG GGCGGGGAAT GAAAGACGGC AGGAGGGGGA AACGACCATG TTAGCGGGGG
  T
  GGGGGGGGGG ATGAAAGAAG GCAGGAGGGA GAAGAAAATG AAGATGCTTT AATGCTAGCA
  CTCAGAAGGC TGAAAGTTCA AGGCCAGCCT GCAATACACA GCGAGTTCCT GTCAGCCAGA
  GCTACACAGT AAGACCCTGT CTAAAATATA AAGTCGCCTA GCACCCGAAG GAACTAGAAG
  ACCAGCTAAC TCCATACAAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	QSi5/Ianm	RF/J	RIIIS/J	ST/bJ	SWR/J
ss356504130	MGP_WTSI_2_167208945	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	QSi5/Ianm	RF/J	RIIIS/J	ST/bJ	SWR/J
rs261153695					SNP	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356504130	MGP_WTSI_2_167208945	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167225365 () rs orientation: forward

Symbol	Name	Function Class
Rr397506	regulatory region 397506	271 bp upstream
Rr570568	regulatory region 570568	1354 bp distal
Rr570569	regulatory region 570569	11 bp proximal
Tssr768	transcription start site region 768	1441 bp downstream
Tssr21803	transcription start site region 21803	1547 bp downstream
Tssr21804	transcription start site region 21804	617 bp upstream
Tssr21805	transcription start site region 21805	639 bp upstream
Tssr27773	transcription start site region 27773	114 bp downstream