rs261154979 SNP Detail

Summary

• ID
  rs261154979
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6240251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCTCAAA CAATATACTA
  AATATAGATT ACTACTCAAG AACAAACAAT TTCGAGTAAC AACTGACATT AACAATTGAA
  TCCTAATAGC AATACCCATG GCATCATCAC TAATGATGAA TTTACTTGTT AGTTTAGCTC
  GATGTTCTGT ATACTGAGGC AATCTTATCC AGTCACTTTT AATCTTGAGC TCAAAATGCT
  S
  TTTTCAGAGA ACCTGCAATG CTAGATATAA AAAACCCTTT CAAGTTTCTC AAATAATAAT
  CAATCAGCTC AGTTACATTT TCCACTACAA AGGAGTATTG CTTCCTCTCA GATTACCATA
  ATCAATTTCT GTCAAGATAG ACTGTATTAA CATGAATCTA ATAATGGTGA TTCAAGCCCC
  ATTGTAAGGT CTTTACAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399598512	MGP_WTSI_18_6240249	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261154979					SNP	G	C	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399598512	MGP_WTSI_18_6240249	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6240251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	431 bp proximal
Gm41664	predicted gene, 41664	428 bp upstream
Kif5b	kinesin family member 5B	within coordinates
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	913 bp downstream
Tssr152354	transcription start site region 152354	987 bp downstream
Tssr152355	transcription start site region 152355	1220 bp downstream
Tssr152356	transcription start site region 152356	1235 bp downstream