rs261173699 SNP Detail

Summary

• ID
  rs261173699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63131376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGGACA AGAACAGGAA
  TAGTTCATGA TAAAGTGAGA GTGGAGTCAC CCATCCAGAT GTGCCTCTCT ACCCTAAGTT
  GCTCTTTCTG ATTTGTGTTA CAGTTTATAT GTGTTCAGAA TCACGTGTAA TTTCTTTGTC
  CCTATCCATT AACAGTGGCT CACTTCCCAA GCAGAGGCTT GCATACTGTA GGAGCCCTAT
  Y
  CCCCTTTTGT TTTACAGCTT CTTTGGGCTG GAATATTTGG AGCACTGATT ATGTCCCAGA
  TTCCAGGCTG GCGATGGGGT TATAGAGGCA TCAGGACAGT GACAGCACTG TGATGTGCGG
  ATAAGTGTGG CTGTGAGTGG AGCAGCTACA TCAGGTGAGT GCTGAAGAAG GACAAAGGAA
  TGTTTGACAG CAGCAATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321144709	CHEV_4_62874173	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261173699					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63131376 () rs orientation: forward

Symbol	Name	Function Class
Col27a1	collagen, type XXVII, alpha 1	870 bp upstream
Cpgi14368	CpG island 14368	833 bp proximal
Rr593488	regulatory region 593488	537 bp proximal
Rr593489	regulatory region 593489	801 bp proximal
Rr593490	regulatory region 593490	1323 bp proximal
Rr593491	regulatory region 593491	1806 bp proximal
Tssr1192	transcription start site region 1192	885 bp upstream
Tssr37533	transcription start site region 37533	949 bp upstream
Tssr37534	transcription start site region 37534	995 bp upstream