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rs261186369 SNP Detail
Summary
  • ID
    rs261186369
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:5849058 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAACAGCAGT CTGCTGTTTC
CTGCTCCGAG ATGGAATGAA GCAACTCTTC TGCTTATGAA GAGAAACCTG TCTGAGGCAA
ACGAAACATT GGCACACTGC ACCGCCTCGC AGCCGCTCGA TCCCACTCAT CTCAACAAGC
TCAGCTTCTT TTTACTCCAG GCTTAATGCA GCATTTTCAC TTCATTTCTA TTCTGCTTTT
R
TAAAAGCAGT TTTGAGATGA ACATTTGATC TTCACTGTTT TTCATCAATT CTTTACTTTT
GTGGATAAAG CTTGGTAGAT AAGCCATAAC TTTTAAAGGT ATTGCCATAA CTTTATACTG
GTTGCTTTCA TTTGCTTAAA TTTTTGCATA TGCAGCTTTT CATCAGTAGG AACAATCTCT
GGCTCATGCT CATTCCCCAT                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401662592 MGP_WTSI_19_5799030 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261186369 SNP G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401662592 MGP_WTSI_19_5799030 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5849058 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi10480 CpG island 10480 1951 bp proximal
Gm55521 predicted gene, 55521 within coordinates
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Rr543161 regulatory region 543161 665 bp distal
Rr543162 regulatory region 543162 within coordinates
Rr543163 regulatory region 543163 388 bp proximal
Tssr5416 transcription start site region 5416 1715 bp upstream
Tssr5417 transcription start site region 5417 within coordinates
Tssr5418 transcription start site region 5418 479 bp downstream
Tssr5419 transcription start site region 5419 1133 bp downstream
Tssr5420 transcription start site region 5420 1150 bp downstream
Tssr154496 transcription start site region 154496 1963 bp upstream
Tssr157652 transcription start site region 157652 1926 bp upstream
Tssr157653 transcription start site region 157653 1842 bp upstream
Tssr157654 transcription start site region 157654 1788 bp upstream
Tssr157655 transcription start site region 157655 1762 bp upstream
Tssr157656 transcription start site region 157656 1729 bp upstream
Tssr157657 transcription start site region 157657 1609 bp upstream
Tssr157658 transcription start site region 157658 1503 bp upstream
Tssr157659 transcription start site region 157659 1399 bp upstream
Tssr157660 transcription start site region 157660 1303 bp upstream
Tssr157661 transcription start site region 157661 1270 bp upstream
Tssr157662 transcription start site region 157662 1177 bp upstream
Tssr157663 transcription start site region 157663 1116 bp upstream
Tssr157664 transcription start site region 157664 1002 bp upstream
Tssr157665 transcription start site region 157665 993 bp upstream
Tssr157666 transcription start site region 157666 961 bp upstream
Tssr157667 transcription start site region 157667 707 bp upstream
Tssr157668 transcription start site region 157668 666 bp upstream
Tssr157669 transcription start site region 157669 647 bp upstream
Tssr157670 transcription start site region 157670 631 bp upstream
Tssr157671 transcription start site region 157671 610 bp upstream
Tssr157672 transcription start site region 157672 560 bp upstream
Tssr157673 transcription start site region 157673 526 bp upstream
Tssr157674 transcription start site region 157674 514 bp upstream
Tssr157675 transcription start site region 157675 501 bp upstream
Tssr157676 transcription start site region 157676 486 bp upstream
Tssr157677 transcription start site region 157677 464 bp upstream
Tssr157678 transcription start site region 157678 450 bp upstream
Tssr157679 transcription start site region 157679 382 bp upstream
Tssr157680 transcription start site region 157680 355 bp upstream
Tssr157681 transcription start site region 157681 334 bp upstream
Tssr157682 transcription start site region 157682 321 bp upstream
Tssr157683 transcription start site region 157683 285 bp upstream
Tssr157684 transcription start site region 157684 275 bp upstream
Tssr157685 transcription start site region 157685 260 bp upstream
Tssr157686 transcription start site region 157686 199 bp upstream
Tssr157687 transcription start site region 157687 178 bp upstream
Tssr157688 transcription start site region 157688 131 bp upstream
Tssr157689 transcription start site region 157689 94 bp upstream
Tssr157690 transcription start site region 157690 22 bp upstream
Tssr157691 transcription start site region 157691 19 bp downstream
Tssr157692 transcription start site region 157692 73 bp downstream
Tssr157693 transcription start site region 157693 130 bp downstream
Tssr157694 transcription start site region 157694 188 bp downstream
Tssr157695 transcription start site region 157695 252 bp downstream
Tssr157696 transcription start site region 157696 273 bp downstream
Tssr157697 transcription start site region 157697 322 bp downstream
Tssr157698 transcription start site region 157698 338 bp downstream
Tssr157699 transcription start site region 157699 396 bp downstream
Tssr157700 transcription start site region 157700 445 bp downstream
Tssr157701 transcription start site region 157701 463 bp downstream
Tssr157702 transcription start site region 157702 499 bp downstream
Tssr157703 transcription start site region 157703 550 bp downstream
Tssr157704 transcription start site region 157704 576 bp downstream
Tssr157705 transcription start site region 157705 597 bp downstream
Tssr157706 transcription start site region 157706 645 bp downstream
Tssr157707 transcription start site region 157707 691 bp downstream
Tssr157708 transcription start site region 157708 701 bp downstream
Tssr157709 transcription start site region 157709 713 bp downstream
Tssr157710 transcription start site region 157710 732 bp downstream
Tssr157711 transcription start site region 157711 751 bp downstream
Tssr157712 transcription start site region 157712 788 bp downstream
Tssr157713 transcription start site region 157713 815 bp downstream
Tssr157714 transcription start site region 157714 866 bp downstream
Tssr157715 transcription start site region 157715 883 bp downstream
Tssr157716 transcription start site region 157716 927 bp downstream
Tssr157717 transcription start site region 157717 954 bp downstream
Tssr157718 transcription start site region 157718 999 bp downstream
Tssr157719 transcription start site region 157719 1053 bp downstream
Tssr157720 transcription start site region 157720 1072 bp downstream
Tssr157721 transcription start site region 157721 1108 bp downstream
Tssr157722 transcription start site region 157722 1125 bp downstream
Tssr157723 transcription start site region 157723 1200 bp downstream
Tssr157724 transcription start site region 157724 1209 bp downstream
Tssr157725 transcription start site region 157725 1255 bp downstream
Tssr157726 transcription start site region 157726 1260 bp downstream
Tssr157727 transcription start site region 157727 1275 bp downstream
Tssr157728 transcription start site region 157728 1372 bp downstream
Tssr157729 transcription start site region 157729 1571 bp downstream
Tssr157730 transcription start site region 157730 1701 bp downstream
Tssr157731 transcription start site region 157731 1724 bp downstream
Tssr157732 transcription start site region 157732 1767 bp downstream
Tssr157733 transcription start site region 157733 1804 bp downstream
Tssr157734 transcription start site region 157734 1821 bp downstream
Tssr157735 transcription start site region 157735 1845 bp downstream
Tssr157736 transcription start site region 157736 1883 bp downstream
Tssr157737 transcription start site region 157737 1939 bp downstream
Tssr157738 transcription start site region 157738 1970 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory