rs261196299 SNP Detail

Summary

• ID
  rs261196299
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3123056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGACCCC AGTTTCCCTC CCAGTACCCA CTTTGATCAG
  CTTACAACTA TAACCCCACT ACGGGTGAAT GAACATTTTC TGGCCTCCAT GGGTACTCAT
  A
  TACATGTATG CACATATGCA CACATATAAA TAAAATAAAA TATGTTTTTA TAATTTAAGA
  AAAGGCATGG TGGTACAAGT CTTTAAACAC AGCCCTCAG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323546753	CHEV_11_3073059	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261196299					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3123056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	475 bp distal
Cpgi2458	CpG island 2458	208 bp proximal
Rr441481	regulatory region 441481	606 bp distal
Rr441482	regulatory region 441482	1774 bp distal
Rr441483	regulatory region 441483	840 bp distal
Rr441484	regulatory region 441484	106 bp distal
Rr441485	regulatory region 441485	135 bp proximal
Rr441486	regulatory region 441486	917 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	259 bp upstream
Tssr106449	transcription start site region 106449	263 bp downstream