rs261196704 SNP Detail

Summary

• ID
  rs261196704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:17584378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCCTTTC CTTTGGTTGA
  TCAGACTTTG ACAGGGGTTG CCTCTGCACC CACAGAGAAT TGATCTGCTA GGGAAACCTG
  ACCAGAACTC CCCACTGGCT TCACCCACCT TGCCAGATAT CACAACTTGC AAAAAAGCAA
  AGTCCAGGGA AGGAAAGAGG AGGCGACATC CCAGAGACAG CTAGTTTGAG TACCTTGGAG
  R
  GGAAGCATAG GAATGGGGTG AGAGGAGGTG TAAGGCTATG GGAACACCAC TCAGCTAGGA
  GCTCTCTCTG ATGGCACAGG AGCCCGGCGA GCTTGAACTT GCCAGGCTGA CGGTGCCCAG
  TATGTTTCCC AGGTGCGCTG GGTCCGGGGA GAAGTCGTGG GAACTACCCC AGCCTGCGAC
  CCGCCAAGCC CACCAAGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373858096	MGP_WTSI_8_17534362	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261196704					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373858096	MGP_WTSI_8_17534362	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:17584378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20133	CpG island 20133	1438 bp distal
Cpgi20134	CpG island 20134	41 bp proximal
Csmd1	CUB and Sushi multiple domains 1	within coordinates
Gm63936	predicted gene, 63936	within coordinates
Rr660278	regulatory region 660278	1147 bp distal
Rr660279	regulatory region 660279	within coordinates
Rr660280	regulatory region 660280	909 bp proximal
Tssr80518	transcription start site region 80518	828 bp downstream
Tssr80519	transcription start site region 80519	843 bp downstream
Tssr80520	transcription start site region 80520	867 bp downstream
Tssr80521	transcription start site region 80521	889 bp downstream
Tssr80522	transcription start site region 80522	1246 bp downstream
Tssr80523	transcription start site region 80523	1272 bp downstream
Tssr80524	transcription start site region 80524	1299 bp downstream