rs261198524 SNP Detail

Summary

• ID
  rs261198524
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116552981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAAACAA ACCAAATCAC
  ATACACCCAA CAAAATCCCT GGGGTTGTAG CCTGATATTT GAAGGTTGCA GCTCCTGGGA
  TTTTGAAATG CTATGTATTT TGGGTTTTTA AGGCTTTTGG GTGGGGGTTG GGAGAGAGAA
  TCTGATGTAG CTTAGGCTGC TCTCTGTAGC TAAGTTTGAA CTTGAAAATC TCCATCTCCT
  S
  GATGCTGGTG CTGGGATTAC AAACTGTCGC ATTATATTTT ACCTAGTCTT CTGTTAAGGA
  ATGAAAGAAA GCTAGTAAAT CATTTTTAAG TGCTTTATGT TGGTATTTGC AATTTTTATT
  CTGGTAAAAC AATTTAGCAT TTTAAATATT TATACATCCA TATCCATCAA CATTATTTCT
  GGAACTTTTC ACCACTGGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277816	CHEV_4_116368389	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261198524					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116552981 () rs orientation: forward

Symbol	Name	Function Class
9530001N24Rik	RIKEN cDNA 9530001N24 gene	1293 bp upstream
Prdx1	peroxiredoxin 1	within coordinates
Tssr38562	transcription start site region 38562	1929 bp downstream
Tssr38563	transcription start site region 38563	1824 bp downstream
Tssr38564	transcription start site region 38564	1689 bp downstream
Tssr38565	transcription start site region 38565	1656 bp downstream
Tssr38566	transcription start site region 38566	235 bp upstream