rs261203523 SNP Detail

Summary

• ID
  rs261203523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32698600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGGGCG GGAGGCACGG
  TGGGGGAAGG GGCGGTTGAC CGCGGTTGCC TGTCCGGTTT GGTCGCGCGT GGGCGGAACC
  GGCGAGGACC CCCCCCCCCC GATGGGACGG GAGCGACCCC GGTGTGTCCC ACCCCCGGGG
  GTAGGGAGGG GTCGTAACAA GGACTGGCCG GGCCCGGCGG TCCGCAGGGT CCGTAGCTGC
  Y
  GTCTTCTTTC CCCGCAGGAC GGAGTCTCTT GGGCTACCCG GGCCGGCGTG TGCTCACCCA
  CCCGGGGCTT TTCCTTTTAA AGGGTCTTAG AACCAGCCTG GGGCTGCAAC TGACTAAAGC
  CAGCAACCGC GAGAATAGCT TGTCTGGTGT GAATGCCCAG AAGTGCGCTG GGCACGGGCG
  ATTTCCAACC GGCGCCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395868176	MGP_WTSI_16_32878316	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261203523					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395868176	MGP_WTSI_16_32878316	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32698600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	within coordinates
Fyttd1	forty-two-three domain containing 1	within coordinates
Rr404782	regulatory region 404782	115 bp downstream
Rr514843	regulatory region 514843	475 bp distal
Rr514844	regulatory region 514844	90 bp distal
Rr514845	regulatory region 514845	within coordinates
Rr514846	regulatory region 514846	858 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	479 bp upstream
Tssr138060	transcription start site region 138060	399 bp downstream
Tssr138061	transcription start site region 138061	367 bp downstream
Tssr138062	transcription start site region 138062	336 bp downstream
Tssr138063	transcription start site region 138063	135 bp downstream
Tssr138064	transcription start site region 138064	109 bp downstream
Tssr140832	transcription start site region 140832	595 bp upstream
Tssr140833	transcription start site region 140833	556 bp upstream
Tssr140834	transcription start site region 140834	515 bp upstream
Tssr140835	transcription start site region 140835	488 bp upstream