rs261213018 SNP Detail

Summary

• ID
  rs261213018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124154621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCTGTT TTCCAAAGCT
  CGTGAACCGG ATAGTTAAGG AGTTGCACCA CTCATTACCT TTGCATACTG GGGTTGCCTG
  GTCTGAGGTT AGATTGTTGC TTACTGTGAT GTAGTCCCAG GACGAGGATG GTTTCCAGGA
  TGCTCGGCCT GTGGTTTCGC AGCCCCAAGA GGCACAATAG AAGGATTCTG GACCACCACA
  Y
  GACCGGGCCC ACCGGGGGCG ATGTGGCCCG GGGCAGACAT AGAATCCTTC ATTGTGGGCA
  TGTGTCACTT TAGATAACTT AAGTCTGTTC CAGGCCGTAT TGCACCGGGG AGTATATGAA
  GTCAGGGGCT CCTCACAATC TCTGGAACAG CCTGGCGTGG AGTCGCTGCT TCCTGAACAG
  CAGGGGGGCC CCGGGGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322855351	CHEV_8_125951782	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261213018					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124154621 () rs orientation: forward

Symbol	Name	Function Class
Mela	melanoma antigen	within coordinates
Tssr2728	transcription start site region 2728	402 bp upstream
Tssr79965	transcription start site region 79965	528 bp upstream
Tssr83353	transcription start site region 83353	1143 bp upstream
Tssr83354	transcription start site region 83354	316 bp upstream
Tssr83355	transcription start site region 83355	223 bp upstream
Tssr83356	transcription start site region 83356	153 bp upstream
Tssr83357	transcription start site region 83357	34 bp upstream
Tssr83358	transcription start site region 83358	220 bp downstream
Tssr83359	transcription start site region 83359	1083 bp downstream
Tssr83360	transcription start site region 83360	1190 bp downstream
Tssr83361	transcription start site region 83361	1564 bp downstream
Tssr83362	transcription start site region 83362	1713 bp downstream