rs261216320 SNP Detail

Summary

• ID
  rs261216320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31898404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCCAACC CTCTAATCTA
  TAACCAGTTA GCTTAATCTA TAATCAGTTG TCTGACCCAG TATACCCAGC AATGAATCGG
  CACTGCCCAG TCCTTGGGTC TGGAGGTCAA TGTGGATCTT ACCTGTGGGG CCAGGTGACA
  GTCCCAGCCC CAGGACACAC CAGCTTTCTT GGCTTGAGGA AGCAGAGGAG TGACGGTTGG
  Y
  TCTGATGGCT GAGCTCTTCC TTGTCCTATG TGATCCAGCC CATCAGGGAC CATACAGCTG
  TTCCCCCATC CTTTGTCTCT GGAGCTGGTG GTCCTTTGGG GAGCTCCAAA CGTGGGTTTG
  GGTTTCAGGT CCGATCTGAC CGGGACAAGT TTGTCATCTT CTTGGACGTG AAGCACTTCT
  CTCCTGAGGA CCTCACCGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398015968	MGP_WTSI_17_31816375	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261216320					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398015968	MGP_WTSI_17_31816375	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31898404 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	within coordinates
D17Rua3	DNA segment, Chr 17, Rutgers University 3	within coordinates
Gm50222	predicted gene, 50222	within coordinates
Rr525551	regulatory region 525551	1620 bp proximal
Tssr5085	transcription start site region 5085	1831 bp upstream
Tssr5086	transcription start site region 5086	1945 bp upstream
Tssr143680	transcription start site region 143680	1491 bp downstream
Tssr143681	transcription start site region 143681	496 bp downstream
Tssr143682	transcription start site region 143682	139 bp upstream
Tssr143683	transcription start site region 143683	209 bp upstream
Tssr143684	transcription start site region 143684	1572 bp upstream
Tssr143685	transcription start site region 143685	1612 bp upstream
Tssr143686	transcription start site region 143686	1713 bp upstream
Tssr143687	transcription start site region 143687	1731 bp upstream
Tssr143688	transcription start site region 143688	1865 bp upstream
Tssr143689	transcription start site region 143689	1888 bp upstream
Tssr147305	transcription start site region 147305	1306 bp upstream
Tssr147306	transcription start site region 147306	1264 bp upstream
Tssr147307	transcription start site region 147307	1236 bp upstream
Tssr147308	transcription start site region 147308	890 bp upstream
Tssr147309	transcription start site region 147309	1840 bp downstream