rs261228493 SNP Detail

Summary

• ID
  rs261228493
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153425558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCCCTCAG TCCCAAAGCT
  ACCCTGCCCA GCGTACCTGA CTTCACTCCT CTGCTCGGTG GCGCCGCGCT CACCTAGGCT
  GCTGTGCACT GGAGACGCGA TCTCCTCTGA GCAGCGCGGT TGCGCTTTTA ACTCAGGGGC
  TGCGGGACCA CGTGGGGCCG CGCGGGGAGC CTGGGGGTTG TAGTTCCACG TCGGGCCGGG
  R
  AGCTGCTTCA CCGGCTGGAA TCCCGAGACT GCACTAGTTG CTCCTTCTTG GGTGTGGCCA
  CAGCCTATTT TGTGAAAGAC TCGTAGCTCC TGCACCTCTT GGATACCCAC TGTCCTTATT
  ATTCTGAGTC CGGGAGTTCT CCTCCTGTTC AAGTCCTGCA AGTGCCAAGT CTTGTTTGCA
  TTGGATGTGA GATGTTGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351975350	MGP_WTSI_1_155396942	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261228493					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351975350	MGP_WTSI_1_155396942	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153425558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	within coordinates
F630010C12Rik	RIKEN cDNA F630010C12 gene	101 bp upstream
Npl	N-acetylneuraminate pyruvate lyase	98 bp upstream
Rr420696	regulatory region 420696	1836 bp distal
Rr420697	regulatory region 420697	within coordinates
Rr420698	regulatory region 420698	223 bp proximal
Rr420699	regulatory region 420699	1079 bp proximal
Rr420700	regulatory region 420700	1165 bp proximal
Tssr14276	transcription start site region 14276	88 bp upstream
Tssr14277	transcription start site region 14277	67 bp upstream
Tssr14278	transcription start site region 14278	6 bp downstream
Tssr14279	transcription start site region 14279	26 bp downstream
Tssr14280	transcription start site region 14280	233 bp downstream