rs261234044 SNP Detail

Summary

• ID
  rs261234044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGGTTC TCAACCTTCC
  TAATGCTGTG ACTCTTTAAT ACATATAGTT CGTGTCCTGG TAACACCCAA CCATGAAAAT
  TATTTATTGC TACTTCATAA CTGTAATTTT GCTACTGTTA TGAATAATAA TGTAAATATC
  TGATAAACAG GACATCTGAT ATACAATCAC AGTGGGGTCA CGACCCACAG GTTGAGAACC
  R
  CTTCTCTAGC CTCATCTAAG TTAGTTTTTA AGTTAGAGTC TATCCTTAGC TTAGGGCTCA
  CCCAATTGGA TGATGCTGCT GGCTATTGAA CCCCAGGAAT CGGCCTGTTT CTACTTACCC
  ATAGTTGGGA TCTTAAGTAC GCACAACCAC ACCTGGCTTC TTTCACCGGT TCTGAGGACA
  TGTGTCCCCA TGCTTGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321390090	CHEV_4_141376041	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261234044					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547437 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	1049 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	127 bp distal
Gm56298	predicted gene, 56298	within coordinates
Rr603893	regulatory region 603893	1167 bp distal
Tssr40108	transcription start site region 40108	1082 bp downstream
Tssr40109	transcription start site region 40109	1047 bp downstream
Tssr40110	transcription start site region 40110	1024 bp downstream
Tssr40111	transcription start site region 40111	1199 bp upstream
Tssr40112	transcription start site region 40112	1227 bp upstream
Tssr40113	transcription start site region 40113	1256 bp upstream
Tssr40114	transcription start site region 40114	1578 bp upstream
Tssr40115	transcription start site region 40115	1612 bp upstream
Tssr40116	transcription start site region 40116	1652 bp upstream
Tssr44373	transcription start site region 44373	1840 bp upstream
Tssr44374	transcription start site region 44374	994 bp upstream
Tssr44375	transcription start site region 44375	761 bp upstream
Tssr44376	transcription start site region 44376	743 bp upstream
Tssr44377	transcription start site region 44377	134 bp upstream
Tssr44378	transcription start site region 44378	13 bp upstream
Tssr44379	transcription start site region 44379	1226 bp downstream
Tssr44380	transcription start site region 44380	1238 bp downstream
Tssr44381	transcription start site region 44381	1594 bp downstream
Tssr44382	transcription start site region 44382	1613 bp downstream
Tssr44383	transcription start site region 44383	1664 bp downstream