rs261238690 SNP Detail

Summary

• ID
  rs261238690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:116951951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGGGCAGC CGGCGGCCAG
  GCGGGAGATG GTGCGCGGCA CCTCGGCGGG ACCGCGCCGC CTCCCGCAGC CAGCGCTCGG
  CTGCCCCCCG CCGGCTCCCG CCGCCCGCCC GTCGCCGCGC CCCTGAGAGC AGCACCGCCT
  CAGCCACCGG CCGCGTCCCC CTCAGCGCCC GCAGTCGCCC GCGCCGTCTC GGCTTCGCAC
  Y
  CGACCTCGGC GCGGCAAACC GCTGGGGTCG CCACGGCCGC GCTTGCTGCC GCCGCCCCCC
  TGCGGGGGTG GCCGGGCTGC CCGGCTCGCG GGGCACCGCT CCGAGTGAGG CATCCACCAT
  GGTGAGGCCC CCGAGCCGCT GCCCGCGCGC CCCGCCGGCC GTCGTCGCCC GCCGCCCCTC
  GGTGCCGCCG CTGCCGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355379020	MGP_WTSI_2_116947206	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261238690					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355379020	MGP_WTSI_2_116947206	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:116951951 () rs orientation: forward

Symbol	Name	Function Class
Gm74661	predicted gene, 74661	512 bp downstream
Rr367269	regulatory region 367269	605 bp downstream
Rr373730	regulatory region 373730	1159 bp downstream
Rr397194	regulatory region 397194	1340 bp upstream
Rr563062	regulatory region 563062	983 bp distal
Rr563063	regulatory region 563063	1035 bp distal
Rr563064	regulatory region 563064	within coordinates
Rr563065	regulatory region 563065	179 bp proximal
Spred1	sprouty protein with EVH-1 domain 1, related sequence	mRNA-UTR
Tssr19479	transcription start site region 19479	1029 bp downstream
Tssr19480	transcription start site region 19480	716 bp downstream
Tssr19481	transcription start site region 19481	676 bp downstream
Tssr19482	transcription start site region 19482	615 bp downstream
Tssr19483	transcription start site region 19483	588 bp downstream
Tssr19484	transcription start site region 19484	565 bp downstream
Tssr19485	transcription start site region 19485	537 bp downstream
Tssr19486	transcription start site region 19486	472 bp downstream
Tssr19487	transcription start site region 19487	425 bp downstream
Tssr19488	transcription start site region 19488	321 bp downstream
Tssr19489	transcription start site region 19489	293 bp downstream
Tssr19490	transcription start site region 19490	71 bp downstream
Tssr19491	transcription start site region 19491	within coordinates
Tssr19492	transcription start site region 19492	1752 bp upstream
Tssr25740	transcription start site region 25740	1403 bp downstream