rs261238812 SNP Detail

Summary

• ID
  rs261238812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12769240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTGCTT GCACCTCATC
  CCAGTGAGTG GTCCCACCCA ATCCACGGCC ACATTTATCT TCATTATAGA CGCTGGTGGA
  CCTCACTTGT ACCTCCCACC CCACAGAAGG AAGAGGCAGA GGCCATGCAG TAACATTCCC
  CTTTAATAGC CTGGTGGGAC CTCCAGTGGT GGTGGGGTGG GTTGCTTGGG CCTAGCGACC
  Y
  AGGCCCATTG CCCACTTACC CCACAGTCAA GAGTGGGGAG TTGGACAGCA CCCAGCGGGA
  GGGGGGGGGC GCTAAACAAG CCAATTCATT TCCCATCGCT GAGCAGGTCG GGGGGGAGGC
  AGCACCGACC ATAATCACGT GGTGGTCAAA AAAAAAATAA CTAGGGGCAG GTGACAGGGA
  AGAGAGGCAA GGCCAAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322107206	CHEV_7_13620662	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261238812					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12769240 () rs orientation: forward

Symbol	Name	Function Class
Chmp2a	charged multivesicular body protein 2A	536 bp upstream
Cpgi18334	CpG island 18334	194 bp distal
Rr368233	regulatory region 368233	369 bp downstream
Tssr64534	transcription start site region 64534	434 bp downstream
Tssr70642	transcription start site region 70642	1348 bp upstream
Tssr70643	transcription start site region 70643	1277 bp upstream
Tssr70644	transcription start site region 70644	1167 bp upstream
Tssr70645	transcription start site region 70645	899 bp upstream
Tssr70646	transcription start site region 70646	640 bp upstream
Tssr70647	transcription start site region 70647	599 bp upstream
Tssr70648	transcription start site region 70648	531 bp upstream
Tssr70649	transcription start site region 70649	140 bp downstream
Tssr70650	transcription start site region 70650	159 bp downstream
Tssr70651	transcription start site region 70651	1311 bp downstream
Ube2m	ubiquitin-conjugating enzyme E2M	within coordinates