rs261239724 SNP Detail

Summary

• ID
  rs261239724
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:149560825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGTGTT TTGCCGACAG
  GGTTTTGCAT ATTTTGGATA CTAGTTTAAG CCGACTTTGT TTAACCCTGC CACTCCTAAC
  CATAAGGTTA TGATTTAATG TAATGGCTAA TAATATGGTT TAATAAATGG GTGTATGGTT
  TATTCCTTGT TTAATCTAAC CTTTCATTTT CTTTCCTTGG AAAGTAAGCT TAGGTTCCAT
  R
  AAGAGAAAGC AGAGGTGGAT GCTGCTGGCT CCTGCTTTCA ATTCTTATGT ACCGTTAAAA
  AAAACGTCAA AGTTTGCCTG AAAACCCCGT GTGTACCCTC TAGAATATGG AAATATGCAC
  AATTAAAACG TGCGCTGCTA AATAAGTGTG TAATTGAATG AAGAGTTGGG GCCCAGGGTT
  AAAAACTAAC TCCTGAAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367160436	MGP_WTSI_5_150439935	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261239724					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367160436	MGP_WTSI_5_150439935	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149560825 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17098	CpG island 17098	378 bp distal
Gm20005	predicted gene, 20005	1372 bp upstream
Hsph1	heat shock 105kDa/110kDa protein 1	mRNA-UTR
Rr399535	regulatory region 399535	848 bp downstream
Rr625552	regulatory region 625552	1200 bp distal
Rr625553	regulatory region 625553	922 bp distal
Rr625554	regulatory region 625554	within coordinates
Tssr49917	transcription start site region 49917	905 bp downstream
Tssr49918	transcription start site region 49918	836 bp downstream
Tssr49919	transcription start site region 49919	821 bp downstream
Tssr49920	transcription start site region 49920	519 bp downstream
Tssr54646	transcription start site region 54646	1170 bp upstream
Tssr54647	transcription start site region 54647	1147 bp upstream
Tssr54648	transcription start site region 54648	1107 bp upstream
Tssr54649	transcription start site region 54649	1069 bp upstream
Tssr54650	transcription start site region 54650	1021 bp upstream
Tssr54651	transcription start site region 54651	665 bp upstream