rs261240498 SNP Detail

Summary

• ID
  rs261240498
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:9963296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGGCCTC AGACCCAAGA
  AGGTATCCCA GAAGACCGTG GCCAATGCCT GAAGTGAGGT GGGAAGAGCT CAGGTAAAGA
  CAAGTGTTCA TTTGCCATCT AACAAATAGT GAGGCTGGCC CTTGAGCTAC ACTAGCTAGA
  GTCTCAGTTC TGTCTCAAGG CTACCTGCAA GAGGCTAGCC AACCATCCCT GCAAGAACCA
  M
  CTCATTACTT CCCAAGAGAC ATCATTTCAG CATTCTGTTA GTATTGCACT TGCTAGAAGT
  TTGTTGCTCA TATCAAGCCC TTAGGTGGAG TGAACAAAAG GCCTCTATCA CAGGGTTCTT
  TCCTAGGTAG TTGGCATTAA CCCTCAGCTA GTGTAGGAAC ACAAGTTTCC CCCACAGGTC
  AGTAGTAATG AACTGGGGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss401720093	MGP_WTSI_19_10060422	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	A	C	C	A	A	C	C	A	A	C	C	C	C	A	A	A	A	C	A	A	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs261240498					SNP	C	C	C	A	C	C	A	A	C	C	A	A	C	C	C	C	A	A	A	A	C	A	A	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401720093	MGP_WTSI_19_10060422	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9963296 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	Intron
Fth1	ferritin heavy polypeptide 1	834 bp downstream
Rr543966	regulatory region 543966	1930 bp distal
Rr543967	regulatory region 543967	1350 bp distal
Rr543968	regulatory region 543968	1365 bp proximal
Tssr155006	transcription start site region 155006	1713 bp downstream
Tssr155007	transcription start site region 155007	1640 bp downstream
Tssr155008	transcription start site region 155008	1349 bp downstream
Tssr155009	transcription start site region 155009	1003 bp downstream
Tssr155010	transcription start site region 155010	815 bp downstream
Tssr158137	transcription start site region 158137	1695 bp upstream
Tssr158138	transcription start site region 158138	1606 bp upstream
Tssr158139	transcription start site region 158139	1313 bp upstream
Tssr158140	transcription start site region 158140	1092 bp upstream
Tssr158141	transcription start site region 158141	1064 bp upstream
Tssr158142	transcription start site region 158142	1039 bp upstream
Tssr158143	transcription start site region 158143	973 bp upstream
Tssr158144	transcription start site region 158144	835 bp upstream