rs261252535 SNP Detail

Summary

• ID
  rs261252535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:118571661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCTTTTCT TTCTCCTCTT TGGCCCCCAA GACATCTTTC
  ATGTTGCCCT ATCTGTCCAA GAAACCTTCA CTTTGGTTTG GTGAGTGTTA AGCCCTGCCC
  Y
  CCCCCCCCCC CCCCAGCTGT CTGCCTCAGG GTAAGGTGCA CTCTTTGCTT TTGTTTGGGA
  GGGCTGCAGA TGACCATCGT GTGTCCAACT GGCCTGCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321925389	CHEV_6_118544718	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261252535					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118571661 () rs orientation: forward

Symbol	Name	Function Class
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	within coordinates
Cpgi17905	CpG island 17905	659 bp distal
Gm38887	predicted gene, 38887	1456 bp upstream
Rr637493	regulatory region 637493	1174 bp distal
Rr637494	regulatory region 637494	755 bp distal