rs261254115 SNP Detail

Summary

• ID
  rs261254115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19054458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACTCAA TACATATGAC
  TTCTCTTCTT GTATGTAGCT ATCAGACTTA GTCAAACTGT ATTAGATGCA GAGTTCACGG
  ACCCTACTGA TATTTGTCAT GAGTGCACAT CCTGTTTCTG TGTTCAGAAC ACAAAGCTTT
  TAGGTTGTAG CTTTCAAAGT AGCAAAATGT TCTTTTTACA TCCCCTTCTG GTCCACCCCC
  Y
  CCCCCACCCC CCTCCCCCAT CAGTACTCCT ATTAGTCTCT ATTTCTGTAA ATCCTGCCAC
  CTCAGAGTCA TCTTCTTACT GTTTCCAGAA AAACAAAACA AAACAAAAAC AGTCCAAAAC
  TATCAAAGAG AAGAGTATTG AGAGACCAGA TGAACTCTAT CTTGGGTTCA GGCTCCATCT
  AAAAGAACCT GATCTAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss353264607	MGP_WTSI_2_18971274	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs261254115					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353264607	MGP_WTSI_2_18971274	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19054458 () rs orientation: forward

Symbol	Name	Function Class
Gm75706	predicted gene, 75706	607 bp upstream
Rr552425	regulatory region 552425	322 bp proximal
Rr552426	regulatory region 552426	618 bp proximal
Tssr16405	transcription start site region 16405	401 bp upstream
Tssr22816	transcription start site region 22816	1266 bp upstream