rs261256021 SNP Detail

Summary

• ID
  rs261256021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:15077927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATCCCC CTTCCCGACA
  CGAGCACGCG CGTCCCGTGG AACTCGAGTC TTTGGACGAG CTTGGGGAGC CCGTGCCTGT
  GCCGCCCGGG GTCGGGTCGG TGCACGGAGA ACCCGACCTG GTCATCGAGG TGGCCGGTCG
  CCGACTACGG GCGCATAAGG CGGTGCTGGC CGCACGCAGC GACTACTTCC GCGCGCGCGC
  R
  TCCCGGGACG TGCTGCGGGT GCAAGGCGTG AGCTTCACTG CCCTGCGGCT ACTGCTGGCC
  GACGCATACA GCGGGCGCAT GGCGGGCGTG CGGCCCGACA ACGTGGCCGA GGTGGTGGCC
  GGCGCGCGCC GCCTCCAGCT GCCCGGCGCT GCGCAGCGCG CCACCGAGGC CATGGCGCCG
  CAGCTGAGCC TGGACAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373787494	MGP_WTSI_8_15027927	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261256021					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373787494	MGP_WTSI_8_15027927	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15077927 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20129	CpG island 20129			within coordinates
Gm37844	predicted gene, 37844			within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr660168	regulatory region 660168			1596 bp distal
Rr660169	regulatory region 660169			502 bp distal
Rr660170	regulatory region 660170			248 bp proximal
Tssr76486	transcription start site region 76486			751 bp downstream
Tssr76487	transcription start site region 76487			721 bp downstream
Tssr76488	transcription start site region 76488			578 bp downstream
Tssr76489	transcription start site region 76489			540 bp downstream
Tssr76490	transcription start site region 76490			150 bp downstream
Tssr76491	transcription start site region 76491			31 bp upstream
Tssr76492	transcription start site region 76492			827 bp upstream
Tssr80488	transcription start site region 80488			264 bp upstream