rs261263440 SNP Detail

Summary

• ID
  rs261263440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162399618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTCTCCTG TTGGCTAAGA TCAGCTTTTG
  CTGTTAGCTA AGATCAATAT CTGTTATCAG CCAGTTGTTT CTTTTGGGCT GTCAAGGATA
  TAAATATATC GTCCAGATAC AGTTTAAATC TCATTTTCTC CAGTTCTTGC CTTATCAACT
  Y
  TTTCCCGGTG CATTCTGTAA TATTTCTGCA TGAAATTTAT TCTGAGATTA AGATGTAAGG
  AATAAAATGG GCCAGATGAT TCTAACGGAA GTAATGTGGA ATAAAGACCC CCAGGGCTGT
  GACTCATGCA TGGATGGATA GCAGCTATGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320082940	CHEV_1_164502180	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261263440					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162399618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi932	CpG island 932	436 bp distal
Rr396472	regulatory region 396472	1344 bp downstream
Rr396473	regulatory region 396473	607 bp downstream
Rr421988	regulatory region 421988	813 bp distal
Rr421989	regulatory region 421989	1502 bp distal
Rr421990	regulatory region 421990	1434 bp distal
Rr421991	regulatory region 421991	169 bp distal
Tssr9715	transcription start site region 9715	1393 bp downstream
Tssr9716	transcription start site region 9716	1377 bp downstream
Tssr9717	transcription start site region 9717	1294 bp downstream
Tssr9718	transcription start site region 9718	408 bp downstream
Tssr14622	transcription start site region 14622	1727 bp upstream
Tssr14623	transcription start site region 14623	684 bp upstream
Tssr14624	transcription start site region 14624	674 bp upstream
Tssr14625	transcription start site region 14625	641 bp upstream
Tssr14626	transcription start site region 14626	607 bp upstream
Tssr14627	transcription start site region 14627	562 bp upstream
Tssr14628	transcription start site region 14628	544 bp upstream
Tssr14629	transcription start site region 14629	509 bp upstream
Vamp4	vesicle-associated membrane protein 4	within coordinates